How can I use autotile for this layout?

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How can I use autotile for this layout?

neptuneskies

This is a 16 by 16 asset pack called Rogue Noir. It's full of floors layoud out like this, and I quickly realized it's incomplete for a 3x3. First I thought of making a new spritesheet using https://wareya.github.io/webtyler/, but I also quickly realized my sprite sheet has those "tile variations" that I don't know how to handle.

Any ideas on how I should proceed?!

SnapCracklins

neptuneskies Shouldn't be too hard to edit. I would just dump it in whatever art program and split it up as needed. May have to sort some pixels but hey.... them's the breaks.